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# ABCLab
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<p align="center">
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<img src="assets/logo/logo_1600.png" width="256" alt="Argent Flux Logo">
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<img src="assets/logo/logo_1600.png" alt="Argent Flux Logo" width="480">
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</p>
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<h1 align="center">Argent Flux</h1>
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Advanced Biological Computation Laboratory (ABC-Lab) is a C++ simulation framework aimed at modeling complex biological systems across multiple levels of abstraction. Its long-term goal is to unify key scientific domains—including quantum mechanics, thermodynamics, fluid dynamics, and systems biology—into a modular and extensible platform for biological simulation and experimentation.
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<p align="center">
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<em>A C++ simulation environment for exploring physics, intelligence, and the flow of systems.</em>
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</p>
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The simulation does not not attempt to model all physical layers simultaneously, but rather enables switching between levels (e.g., quantum, molecular, cellular) as needed for the task or model being studied.
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---
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Key focus areas:
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## What is Argent Flux?
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Multiscale modeling of biological processes, from quantum effects to cell-level behaviors
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**Argent Flux** is a **multi-physics simulation program** built to explore how physical and intelligent systems interact — from heat transfer and fluid motion to machine-learning-driven control.
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It is developed under the **Argent Letters** brand, where each Greek letter represents a distinct line of products, ideas, and experiments.
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Physics-driven simulation, incorporating core equations such as the heat equation, Maxwell’s equations, and Navier–Stokes equations, to support thermodynamic, electromagnetic, and fluidic modeling
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Where traditional tools like *OpenFOAM* specialize in specific fields such as fluid dynamics, **Flux** aims to be a **unified foundation**:
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a framework capable of simulating and learning from any system that can be described by equations, data, or both.
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Modular architecture, allowing independent development and integration of biological subsystems (e.g., protein folding, fluid flow, signal propagation)
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---
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High-performance C++ engine, designed for scalability, parallelism, and numerical accuracy
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## What it Can Do
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Planned simulation modules include:
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At its heart, **Flux** solves the equations that describe how things change — temperature, velocity, concentration, or any other field that evolves in space and time.
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It supports **1D, 2D, and 3D domains**, and is being designed to model:
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Quantum biophysics
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- **Heat transfer** in electrical and mechanical systems
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- **Fluid and turbulence** dynamics with machine-learning-aided closure models
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- **Control and decision** systems, such as drones or robotic agents acting within simulated environments
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- **Data-driven hybrid** problems where experimental or AI models interact with physical laws
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Protein dynamics and folding
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---
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Cellular communication and mechanical interaction
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## Why Build It
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Microfluidics and intra-/extracellular flow
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The project grew from the collaboration between engineers and researchers with backgrounds in **power systems**, **fluids**, and **data-driven modeling**.
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The goal is not to reinvent existing solvers, but to **merge classical physics with modern computation** —
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to give engineers and scientists a single tool that can model, experiment, and learn.
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Evolution and adaptive systems modeling
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Flux is written in **modern C++**, using:
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- **OpenMP** and **MPI** for parallel and cluster execution
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- Planned **GPU acceleration** for large-scale problems
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- A design philosophy focused on **clarity, reproducibility, and extendibility**
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Optional integration with AI and machine learning for predictive modeling and control
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Ultimately, we want Flux to scale from a laptop test run to a full **HPC cluster**, making high-fidelity simulation and machine learning accessible in the same environment.
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############
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Folder structure:
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############
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<pre> ABC-Lab/
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├── src/ # C++ source files
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│ ├── core/
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│ ├── modules/
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│ │ ├── fluid_dynamics/
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│ │ ├── quantum/
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│ │ ├── protein/
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│ │ ├── .../
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│ │ ├── .../
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│ └── utils/ # Math, data structures, etc.
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├── include/ # Header files (matching src/)
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├── tests/ # Test code (unit or integration)
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├── docs/ # Markdown, diagrams, papers, notes
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├── examples/ # Example simulation inputs or code
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├── scripts/ # Shell/python/etc. scripts (e.g. build helpers)
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├── Makefile # Simple build system
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├── README.md
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├── LICENSE
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└── .gitignore
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</pre>
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---
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## Vision
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> *To create an open, extensible simulation program that unifies the language of physics, data, and computation.*
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Flux is meant to evolve beyond fluids:
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- from **drone dynamics** in atmospheric conditions,
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- to **heat management** in power electronics,
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- to **data-assisted turbulence** research,
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- and even **multiphysics coupling** for renewable systems.
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Each new feature or solver is a step toward that larger goal — a living laboratory where equations and intelligence coexist.
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---
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## The Argent Letters Concept
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**Argent Letters** is the umbrella under which Flux and other projects live.
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Every product line is a “Letter” — a distinct domain or technology, connected by a shared design language.
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> *Flux* represents flow: of energy, matter, and information.
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> Future Letters may represent balance, structure, or sensing — but F is where it all begins.
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---
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## The Road Ahead
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- [ ] Validation of diffusion, convection, and transport models
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- [ ] Parallel domain decomposition (MPI/OpenMP)
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- [ ] Mesh and geometry handling for complex 3D cases
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- [ ] Data-driven turbulence and neural policy integration
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- [ ] Cluster scaling and GPU compute layer
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- [ ] Public API for external model coupling
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---
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## Contributing & Collaboration
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Flux is currently in active development and evolving quickly.
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We welcome contributions in numerical methods, ML integration, and cluster performance.
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If you’re interested in collaborating on solver development or domain-specific extensions, feel free to reach out once the public guidelines are released.
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---
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<p align="center">
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<sub>Argent Flux — simulation for the flow of intelligence and matter.</sub>
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</p>
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